Transcript: ENST00000413644.2 CD164-001

Description

CD164 molecule, sialomucin [Source:HGNC Symbol;Acc:1632]

Gene Synonyms

MGC-24, MUC-24, endolyn

Location

Chromosome 6: 109,687,717-109,703,660 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 10 domains and features, is associated with 8017 variant alleles and maps to 507 oligo probes.

Gene

This transcript is a product of gene ENSG00000135535.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000310786.4	CD164-003	2993	197aa	ENSP00000309376.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5073	Q04900	NM_006016.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368961.5	CD164-201	3014	165aa	ENSP00000357957.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JSU3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000275080.7	CD164-004	2954	184aa	ENSP00000275080.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47464	Q04900	NM_001142401.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000324953.5	CD164-002	2936	178aa	ENSP00000314177.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47465	Q04900	NM_001142402.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413644.2	CD164-001	2414	189aa	ENSP00000402237.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47463	Q04900	NM_001142403.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504373.1	CD164-005	1402	163aa	ENSP00000422999.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R9B4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000512821.1	CD164-007	964	157aa	ENSP00000427546.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47462	Q04900	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506649.1	CD164-011	778	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000415861.2	CD164-008	4963	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000499860.2	CD164-006	2845	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512212.1	CD164-012	590	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,414 bps, Translation length: 189 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q04900

CCDS

This transcript is a member of the Human CCDS set: CCDS47463

Version

ENST00000413644.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000041740 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000413644.2 CD164-001

Summary