Transcript: ENST00000370384.3 KHDC1-005

Description

KH homology domain containing 1 [Source:HGNC Symbol;Acc:21366]

Gene Synonyms

C6orf148, MGC10818, NDG1, bA257K9.4

Location

Chromosome 6: 73,951,037-74,019,938 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 29987 variant alleles and maps to 327 oligo probes.

Gene

This transcript is a product of gene ENSG00000135314.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000370384.3	KHDC1-005	1430	237aa	ENSP00000359411.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59027	A6PVU5 Q4VXA5	NM_001251874.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000257765.5	KHDC1-001	1134	164aa	ENSP00000257765.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43480	A6PVU5 Q4VXA5	NM_030568.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433730.1	KHDC1-004	547	98aa	ENSP00000406966.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6PVU5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000484801.1	KHDC1-006	2053	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474593.1	KHDC1-007	537	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,430 bps, Translation length: 237 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q4VXA5

CCDS

This transcript is a member of the Human CCDS set: CCDS59027

Version

ENST00000370384.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs16883571, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HAPMAP-LWK.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000148103 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000370384.3 KHDC1-005

Summary