Transcript: ENST00000342020.5 CTSL-004

Description

cathepsin L [Source:HGNC Symbol;Acc:2537]

Gene Synonyms

CATL, CTSL1, FLJ31037, MEP

Location

Chromosome 9: 90,341,055-90,343,912 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 10 domains and features, is associated with 1545 variant alleles and maps to 254 oligo probes.

Gene

This transcript is a product of gene ENSG00000135047.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000343150.5	CTSL-001	2177	333aa	ENSP00000345344.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6675	P07711 Q5K630 Q8NG13 Q9HBQ7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000340342.6	CTSL-002	1436	333aa	ENSP00000365061.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6675	P07711 Q5K630 Q8NG13 Q9HBQ7	NM_145918.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000342020.5	CTSL-004	933	225aa	ENSP00000340470.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5K630 Q5T8F0 Q8NG13	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000495822.1	CTSL-003	988	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000375894.5	CTSL-005	975	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482054.1	CTSL-006	908	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 933 bps, Translation length: 225 residues

Version

ENST00000342020.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs2378757, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-ASW, CSHL-HAPMAP:HAPMAP-TSI, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HAPMAP-MEX, CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-CHB, CSHL-HAPMAP:HAPMAP-CHD.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000052939 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000342020.5 CTSL-004

Summary