Transcript: ENST00000533705.1 UBQLN1-003

Description

ubiquilin 1 [Source:HGNC Symbol;Acc:12508]

Gene Synonyms

DA41, DSK2, PLIC-1, PLIC1, UBQN, XDRP1

Location

Chromosome 9: 86,274,886-86,300,968 reverse strand.

About this transcript

This transcript has 9 exons, is associated with 12293 variant alleles and maps to 497 oligo probes.

Gene

This transcript is a product of gene ENSG00000135018.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376395.4	UBQLN1-001	4118	589aa	ENSP00000365576.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6663	Q9UMX0	NM_053067.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000257468.7	UBQLN1-002	2299	561aa	ENSP00000257468.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6664	Q9UMX0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526134.1	UBQLN1-006	475	158aa	ENSP00000436912.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000529923.1	UBQLN1-004	471	157aa	ENSP00000434194.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YDS0	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000533705.1	UBQLN1-003	6055	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000527373.1	UBQLN1-005	562	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 0, Transcript length: 6,055 bps,

Version

ENST00000533705.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000388647 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000533705.1 UBQLN1-003

Summary