Transcript: ENST00000513440.1 CLOCK-001

Description

clock circadian regulator [Source:HGNC Symbol;Acc:2082]

Gene Synonyms

BHLHE8, KAT13D, KIAA0334, bHLHe8

Location

Chromosome 4: 56,301,189-56,413,305 reverse strand.

About this transcript

This transcript has 23 exons, is annotated with 29 domains and features, is associated with 49550 variant alleles and maps to 626 oligo probes.

Gene

This transcript is a product of gene ENSG00000134852.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000309964.4	CLOCK-005	10304	846aa	ENSP00000308741.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3500	C9JK03 O15516	NM_004898.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381322.1	CLOCK-002	4059	846aa	ENSP00000370723.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3500	C9JK03 O15516	NM_001267843.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513440.1	CLOCK-001	3580	846aa	ENSP00000426983.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3500	C9JK03 O15516	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435527.2	CLOCK-010	746	182aa	ENSP00000396649.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JK03	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000506923.1	CLOCK-011	616	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513033.1	CLOCK-008	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509151.1	CLOCK-009	476	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000511124.1	CLOCK-006	3932	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506747.1	CLOCK-007	1337	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479384.1	CLOCK-004	426	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508049.1	CLOCK-012	401	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 23, Coding exons: 20, Transcript length: 3,580 bps, Translation length: 846 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15516

CCDS

This transcript is a member of the Human CCDS set: CCDS3500

Version

ENST00000513440.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000317146 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000513440.1 CLOCK-001

Summary