Transcript: ENST00000256797.4 ERN2-001

Description

endoplasmic reticulum to nucleus signaling 2 [Source:HGNC Symbol;Acc:16942]

Gene Synonyms

IRE1-BETA, IRE1b, IRE2

Location

Chromosome 16: 23,701,697-23,724,821 reverse strand.

About this transcript

This transcript has 22 exons, is annotated with 20 domains and features, is associated with 11114 variant alleles and maps to 571 oligo probes.

Gene

This transcript is a product of gene ENSG00000134398.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000256797.4	ERN2-001	3549	974aa	ENSP00000256797.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32407	Q76MJ5	NM_033266.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457008.2	ERN2-002	3169	874aa	ENSP00000413812.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ETG2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562458.1	ERN2-006	759	188aa	ENSP00000456866.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000562562.1	ERN2-003	2263	129aa	ENSP00000457361.1	Nonsense mediated decay		H3BTW8	-	-
ENST00000569903.1	ERN2-004	980	80aa	ENSP00000457796.1	Nonsense mediated decay		H3BUU2	-	-
ENST00000561478.1	ERN2-008	412	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566565.1	ERN2-007	313	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 22, Coding exons: 22, Transcript length: 3,549 bps, Translation length: 974 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q76MJ5

CCDS

This transcript is a member of the Human CCDS set: CCDS32407

Version

ENST00000256797.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000434887 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000256797.4 ERN2-001

Summary