Transcript: ENST00000472167.1 GRHL1-006

Description

grainyhead-like 1 (Drosophila) [Source:HGNC Symbol;Acc:17923]

Gene Synonyms

LBP-32, LBP32, MGR, NH32, TFCP2L2

Location

Chromosome 2: 10,091,911-10,140,960 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 4 domains and features, is associated with 21223 variant alleles and maps to 463 oligo probes.

Gene

This transcript is a product of gene ENSG00000134317.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000324907.9	GRHL1-001	3563	618aa	ENSP00000324693.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33144	C9JYY8 F8WFB0 Q9NZI5	NM_198182.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000324883.5	GRHL1-201	3527	429aa	ENSP00000324494.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYY8 Q9NZI5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000405379.2	GRHL1-202	3433	618aa	ENSP00000384209.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYY8 J3KPZ1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000480736.1	GRHL1-005	572	72aa	ENSP00000419831.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYY8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000464418.1	GRHL1-003	2099	229aa	ENSP00000420654.1	Nonsense mediated decay		B7Z1S6	-	-
ENST00000472167.1	GRHL1-006	2060	511aa	ENSP00000418275.1	Nonsense mediated decay		F8WFB0 Q9NZI5	-	-
ENST00000439493.1	GRHL1-004	564	93aa	ENSP00000387521.1	Nonsense mediated decay		F8WFB0	-	-
ENST00000497403.1	GRHL1-002	5400	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494520.1	GRHL1-007	780	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 13, Transcript length: 2,060 bps, Translation length: 511 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NZI5

Version

ENST00000472167.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000352826 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000472167.1 GRHL1-006

Summary