Transcript: ENST00000256637.6 SORT1-001

Description

sortilin 1 [Source:HGNC Symbol;Acc:11186]

Gene Synonyms

Gp95, LDLCQ6, NT3

Location

Chromosome 1: 109,852,192-109,940,573 reverse strand.

About this transcript

This transcript has 20 exons, is annotated with 14 domains and features, is associated with 37017 variant alleles and maps to 881 oligo probes.

Gene

This transcript is a product of gene ENSG00000134243.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000256637.6	SORT1-001	7028	831aa	ENSP00000256637.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS798	Q99523	NM_002959.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538502.1	SORT1-201	2656	694aa	ENSP00000438597.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55618	Q99523	NM_001205228.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000482236.1	SORT1-007	615	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493736.1	SORT1-008	583	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471996.1	SORT1-006	469	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485149.1	SORT1-002	442	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495777.1	SORT1-005	391	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483508.1	SORT1-004	759	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466471.1	SORT1-003	521	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 7,028 bps, Translation length: 831 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99523

CCDS

This transcript is a member of the Human CCDS set: CCDS798

Version

ENST00000256637.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000033179 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000256637.6 SORT1-001

Summary