Transcript: ENST00000589685.1 BTBD2-002

Description

BTB (POZ) domain containing 2 [Source:HGNC Symbol;Acc:15504]

Location

Chromosome 19: 1,985,447-1,991,298 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 4048 variant alleles and maps to 366 oligo probes.

Gene

This transcript is a product of gene ENSG00000133243.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000255608.4	BTBD2-001	2635	525aa	ENSP00000255608.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12078	Q6NT96 Q9BX70	NM_017797.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587825.1	BTBD2-011	961	321aa	ENSP00000467113.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000589200.1	BTBD2-007	1219	97aa	ENSP00000466686.1	Nonsense mediated decay		K7EMW9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000590646.1	BTBD2-004	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000587742.1	BTBD2-005	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588395.1	BTBD2-006	352	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000592082.1	BTBD2-010	248	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000592895.1	BTBD2-003	2753	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589685.1	BTBD2-002	2411	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587225.1	BTBD2-008	1070	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 2,411 bps,

Version

ENST00000589685.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000449299 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000589685.1 BTBD2-002

Summary