Transcript: ENST00000518758.1 BHMT2-004

Description

betaine--homocysteine S-methyltransferase 2 [Source:HGNC Symbol;Acc:1048]

Location

Chromosome 5: 78,365,591-78,376,764 forward strand.

About this transcript

This transcript has 4 exons, is associated with 4553 variant alleles and maps to 138 oligo probes.

Gene

This transcript is a product of gene ENSG00000132840.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000255192.3	BHMT2-001	2050	363aa	ENSP00000255192.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4045	E5RH96 Q9H2M3	NM_017614.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521567.1	BHMT2-002	1537	299aa	ENSP00000430278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54871	Q9H2M3	NM_001178005.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518666.1	BHMT2-003	524	68aa	ENSP00000428640.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RH96	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000519743.1	BHMT2-005	578	58aa	ENSP00000430155.1	Nonsense mediated decay		E5RGH5	-	-
ENST00000523472.1	BHMT2-006	702	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000523046.1	BHMT2-007	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000518758.1	BHMT2-004	528	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 528 bps,

Version

ENST00000518758.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000370910 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000518758.1 BHMT2-004

Summary