Transcript: ENST00000457777.2 BCAN-007

Description

brevican [Source:HGNC Symbol;Acc:23059]

Gene Synonyms

BEHAB, CSPG7, MGC13038

Location

Chromosome 1: 156,611,906-156,617,474 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 18 domains and features, is associated with 2897 variant alleles and maps to 160 oligo probes.

Gene

This transcript is a product of gene ENSG00000132692.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000329117.5	BCAN-001	3466	911aa	ENSP00000331210.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1149	Q59F90 Q5T3I7 Q5T3I8 Q96GW7 Q9NT67	NM_021948.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361588.5	BCAN-002	2563	671aa	ENSP00000354925.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1150	Q5T3I7 Q5T3I8 Q96GW7	NM_198427.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424639.1	BCAN-006	844	231aa	ENSP00000401709.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T3I6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000457777.2	BCAN-007	807	213aa	ENSP00000389898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T3I7 Q5T3I8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000441358.1	BCAN-008	600	145aa	ENSP00000392731.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T3I8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000479949.1	BCAN-004	1705	196aa	ENSP00000476509.1	Nonsense mediated decay		Q5T3I8	-	-
ENST00000491823.1	BCAN-005	790	26aa	ENSP00000476259.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000496038.1	BCAN-003	1871	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 807 bps, Translation length: 213 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000457777.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000081842 (version 2)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000457777.2 BCAN-007

Summary