Transcript: ENST00000573994.1 RPA1-005

Description

replication protein A1, 70kDa [Source:HGNC Symbol;Acc:10289]

Gene Synonyms

HSSB, MST075, REPA1, RF-A, RP-A, RPA70

Location

Chromosome 17: 1,794,944-1,800,830 forward strand.

About this transcript

This transcript has 3 exons, is associated with 2942 variant alleles and maps to 347 oligo probes.

Gene

This transcript is a product of gene ENSG00000132383.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000254719.5	RPA1-001	4340	616aa	ENSP00000254719.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11014	I3L2M5 I3L524 P27694	NM_002945.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000574049.1	RPA1-006	3849	313aa	ENSP00000461466.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L4R8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570451.1	RPA1-003	630	153aa	ENSP00000459788.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L2M5 I3L524	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000571058.1	RPA1-002	577	124aa	ENSP00000461733.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L524	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000573924.1	RPA1-004	574	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000571725.1	RPA1-007	413	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000573994.1	RPA1-005	844	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 844 bps,

Version

ENST00000573994.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000437469 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000573994.1 RPA1-005

Summary