Transcript: ENST00000254190.3 CHSY1-001

Description

chondroitin sulfate synthase 1 [Source:HGNC Symbol;Acc:17198]

Gene Synonyms

CHSY, CSS1, ChSy-1, KIAA0990, TPBS

Location

About this transcript

This transcript has 3 exons, is annotated with 14 domains and features, is associated with 36519 variant alleles and maps to 328 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000254190.3	CHSY1-001	4550	802aa	ENSP00000254190.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10390	Q86X52	NM_014918.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543813.1	CHSY1-002	1949	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000561143.1	CHSY1-004	819	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000561414.1	CHSY1-003	564	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560766.1	CHSY1-005	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000559384.1	CHSY1-006	139	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 4,550 bps, Translation length: 802 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86X52

CCDS

This transcript is a member of the Human CCDS set: CCDS10390

Version

ENST00000254190.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000313624 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.