Transcript: ENST00000398226.3 VIMP-001

Description

VCP-interacting membrane protein [Source:HGNC Symbol;Acc:30396]

Gene Synonyms

AD-015, ADO15, MGC2553, SBBI8, SELS, SEPS1

Location

Chromosome 15: 101,811,022-101,817,655 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 6 domains and features, is associated with 3608 variant alleles and maps to 242 oligo probes.

Gene

This transcript is a product of gene ENSG00000131871.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000398226.3	VIMP-001	1439	189aa	ENSP00000381282.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53979	Q6GYA4 Q9BQE4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537379.1	VIMP-201	1292	187aa	ENSP00000437381.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6GYA4	NM_203472.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526049.1	VIMP-002	1188	189aa	ENSP00000433541.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53979	Q6GYA4 Q9BQE4	NM_018445.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531964.1	VIMP-005	764	166aa	ENSP00000433803.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528346.1	VIMP-006	655	218aa	ENSP00000434842.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PN30	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000526043.1	VIMP-003	2444	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000527833.1	VIMP-008	856	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000529968.1	VIMP-009	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000534014.1	VIMP-004	355	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,439 bps, Translation length: 189 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BQE4

CCDS

This transcript is a member of the Human CCDS set: CCDS53979

Version

ENST00000398226.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000389784 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000398226.3 VIMP-001

Summary