Transcript: ENST00000330165.8 RBM8A-001

Description

RNA binding motif protein 8A [Source:HGNC Symbol;Acc:9905]

Gene Synonyms

BOV-1A, BOV-1B, BOV-1C, C1DELq21.1, DEL1q21.1, MDS014, RBM8, RBM8B, TAR, Y14, ZNRP, ZRNP1

Location

About this transcript

This transcript has 6 exons, is annotated with 12 domains and features, is associated with 2926 variant alleles and maps to 781 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000330165.8	RBM8A-001	4919	174aa	ENSP00000333001.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS916	Q9Y5S9	NM_005105.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369307.3	RBM8A-002	796	173aa	ENSP00000358313.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9Y5S9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000498663.1	RBM8A-003	764	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484825.1	RBM8A-004	542	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 4,919 bps, Translation length: 174 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5S9

CCDS

This transcript is a member of the Human CCDS set: CCDS916

Version

ENST00000330165.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000038503 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.