Transcript: ENST00000577541.1 TOP2A-006

Description

topoisomerase (DNA) II alpha 170kDa [Source:HGNC Symbol;Acc:11989]

Gene Synonyms

TOP2, TP2A

Location

Chromosome 17: 38,544,778-38,545,854 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 1 domain and feature, is associated with 422 variant alleles and maps to 156 oligo probes.

Gene

This transcript is a product of gene ENSG00000131747.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000423485.1	TOP2A-001	5758	1531aa	ENSP00000411532.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45672	J3KTB7 J3QR57 P11388	NM_001067.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581055.1	TOP2A-003	579	147aa	ENSP00000462908.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KTB7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000577541.1	TOP2A-006	420	27aa	ENSP00000464055.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QR57	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000578412.1	TOP2A-005	882	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000577706.1	TOP2A-004	554	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 420 bps, Translation length: 27 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000577541.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000447451 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000577541.1 TOP2A-006

Summary