Transcript: ENST00000427436.1 SLC6A6-002

Description

solute carrier family 6 (neurotransmitter transporter), member 6 [Source:HGNC Symbol;Acc:11052]

Gene Synonyms

TAUT

Location

Chromosome 3: 14,444,076-14,520,409 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 22 domains and features, is associated with 33634 variant alleles and maps to 366 oligo probes.

Gene

This transcript is a product of gene ENSG00000131389.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000454876.2	SLC6A6-001	6534	620aa	ENSP00000398063.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33705	C9JPV1 P31641	NM_003043.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360861.3	SLC6A6-201	6506	620aa	ENSP00000354107.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33705	C9JPV1 P31641	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416216.2	SLC6A6-004	1260	200aa	ENSP00000401167.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46765	C9JPV1 P31641	NM_001134368.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452775.1	SLC6A6-009	458	109aa	ENSP00000402059.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JPV1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000452151.1	SLC6A6-011	284	95aa	ENSP00000399522.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000458124.1	SLC6A6-006	6409	359aa	ENSP00000388755.1	Nonsense mediated decay		C9JPV1 E9PDM3 Q59GD7	-	-
ENST00000427436.1	SLC6A6-002	1991	359aa	ENSP00000416199.1	Nonsense mediated decay		C9JPV1 E9PDM3 Q59GD7	-	-
ENST00000435095.1	SLC6A6-005	1124	112aa	ENSP00000399790.1	Nonsense mediated decay		F8WF95	-	-
ENST00000484191.1	SLC6A6-007	697	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490683.1	SLC6A6-008	573	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000428884.2	SLC6A6-003	996	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 7, Transcript length: 1,991 bps, Translation length: 359 residues

Version

ENST00000427436.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000340508 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000427436.1 SLC6A6-002

Summary