Transcript: ENST00000339732.5 GALNT15-001

Description

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15 [Source:HGNC Symbol;Acc:21531]

Gene Synonyms

GALNACT15, GALNT13, GALNT7, GALNTL2, PIH5, pp-GalNAc-T15

Location

About this transcript

This transcript has 10 exons, is annotated with 17 domains and features, is associated with 23827 variant alleles and maps to 709 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000339732.5	GALNT15-001	4669	639aa	ENSP00000344260.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33711	B3KT16 Q8N3T1	NM_054110.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437509.1	GALNT15-002	2416	617aa	ENSP00000395873.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JGI4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000430410.1	GALNT15-004	572	141aa	ENSP00000389079.1	Nonsense mediated decay		H7BZD6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000470031.1	GALNT15-003	815	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489467.1	GALNT15-005	538	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 4,669 bps, Translation length: 639 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N3T1

CCDS

This transcript is a member of the Human CCDS set: CCDS33711

Version

ENST00000339732.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000346483 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.