Transcript: ENST00000426541.1 ZFYVE20-008

Description

zinc finger, FYVE domain containing 20 [Source:HGNC Symbol;Acc:20759]

Gene Synonyms

Rabenosyn-5

Location

Chromosome 3: 15,116,412-15,123,947 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 4 domains and features, is associated with 3013 variant alleles and maps to 188 oligo probes.

Gene

This transcript is a product of gene ENSG00000131381.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000253699.3	ZFYVE20-001	6678	784aa	ENSP00000253699.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2623	D6RD50 Q9H1K0	NM_022340.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000476527.2	ZFYVE20-002	3005	784aa	ENSP00000422551.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2623	D6RD50 Q9H1K0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435849.3	ZFYVE20-201	1127	208aa	ENSP00000391039.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DWY8 D6RD50	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449050.1	ZFYVE20-005	903	88aa	ENSP00000387724.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JZZ1 D6RD50	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507357.1	ZFYVE20-010	582	41aa	ENSP00000427038.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RD50	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000441057.1	ZFYVE20-006	1352	55aa	ENSP00000414020.1	Nonsense mediated decay		D6RD50 F8WE50	-	-
ENST00000426541.1	ZFYVE20-008	664	156aa	ENSP00000403368.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000449964.2	ZFYVE20-004	1132	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483098.1	ZFYVE20-009	532	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463214.1	ZFYVE20-007	591	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 6, Transcript length: 664 bps, Translation length: 156 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000426541.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000340718 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000426541.1 ZFYVE20-008

Summary