Transcript: ENST00000529905.1 PPT1-009

Description

palmitoyl-protein thioesterase 1 [Source:HGNC Symbol;Acc:9325]

Gene Synonyms

CLN1, INCL, PPT

Location

Chromosome 1: 40,538,610-40,562,917 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 13 domains and features, is associated with 10790 variant alleles and maps to 458 oligo probes.

Gene

This transcript is a product of gene ENSG00000131238.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000433473.3	PPT1-001	2740	306aa	ENSP00000394863.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS447	E9PP28 E9PSE5 P50897	NM_000310.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449045.2	PPT1-006	849	203aa	ENSP00000392293.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44119	E9PSE5 P50897	NM_001142604.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372779.4	PPT1-002	827	271aa	ENSP00000361865.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PMG2 E9PP28	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000439754.1	PPT1-003	659	177aa	ENSP00000403207.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T0S4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000527311.2	PPT1-011	623	204aa	ENSP00000436695.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PIA8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000526547.1	PPT1-012	565	98aa	ENSP00000436481.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PP28	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000530076.1	PPT1-013	550	87aa	ENSP00000434007.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PSE5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000529905.1	PPT1-009	1836	306aa	ENSP00000432053.1	Nonsense mediated decay	CCDS447	E9PP28 E9PSE5 P50897	-	-
ENST00000530704.1	PPT1-007	1314	148aa	ENSP00000431655.1	Nonsense mediated decay		E9PK48	-	-
ENST00000372775.2	PPT1-004	563	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,836 bps, Translation length: 306 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P50897

CCDS

This transcript is a member of the Human CCDS set: CCDS447

Version

ENST00000529905.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000386256 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000529905.1 PPT1-009

Summary