Transcript: ENST00000478728.2 CASZ1-006

Description

castor zinc finger 1 [Source:HGNC Symbol;Acc:26002]

Gene Synonyms

CAS11, CST, FLJ20321, SRG, ZNF693, castor, cst, dJ734G22.1

Location

Chromosome 1: 10,720,794-10,753,969 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 15551 variant alleles and maps to 91 oligo probes.

Gene

This transcript is a product of gene ENSG00000130940.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000377022.3	CASZ1-003	7936	1759aa	ENSP00000366221.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41246	Q86V15	NM_001079843.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000344008.5	CASZ1-001	4405	1166aa	ENSP00000339445.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS120	Q86V15	NM_017766.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000447850.3	CASZ1-009	695	231aa	ENSP00000467769.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EQC6	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000478728.2	CASZ1-006	648	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472814.1	CASZ1-008	451	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478524.1	CASZ1-004	337	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496432.2	CASZ1-007	3279	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492173.1	CASZ1-002	2267	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490176.1	CASZ1-005	432	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 648 bps,

Version

ENST00000478728.2

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000005676 (version 2)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000478728.2 CASZ1-006

Summary