Transcript: ENST00000464620.1 ARHGEF16-006

Description

Rho guanine nucleotide exchange factor (GEF) 16 [Source:HGNC Symbol;Acc:15515]

Gene Synonyms

EPHEXIN4, GEF16, NBR

Location

Chromosome 1: 3,388,171-3,391,021 forward strand.

About this transcript

This transcript has 3 exons, is associated with 1656 variant alleles and maps to 120 oligo probes.

Gene

This transcript is a product of gene ENSG00000130762.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000378378.4	ARHGEF16-001	3061	709aa	ENSP00000367629.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46	B0QZD3 Q5VV41	NM_014448.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378371.2	ARHGEF16-003	2219	421aa	ENSP00000367622.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QZD3 Q5VV41	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378373.1	ARHGEF16-002	2211	421aa	ENSP00000367624.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QZD3 Q5VV41	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413250.2	ARHGEF16-201	1504	413aa	ENSP00000408887.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QZD4 B4DJM7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000445297.1	ARHGEF16-005	836	146aa	ENSP00000411936.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QZD3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000418137.1	ARHGEF16-007	576	180aa	ENSP00000390853.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QZD4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000485984.1	ARHGEF16-004	2340	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464620.1	ARHGEF16-006	1403	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,403 bps,

Version

ENST00000464620.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000324123 (version 1)

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Transcript: ENST00000464620.1 ARHGEF16-006

Summary