Transcript: ENST00000460264.1 COL5A1-002

Description

collagen, type V, alpha 1 [Source:HGNC Symbol;Acc:2209]

Location

Chromosome 9: 137,714,768-137,722,199 forward strand.

About this transcript

This transcript has 5 exons, is associated with 5101 variant alleles and maps to 158 oligo probes.

Gene

This transcript is a product of gene ENSG00000130635.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000371817.3	COL5A1-001	8468	1838aa	ENSP00000360882.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6982	P20908 Q59EE7 Q96HC0 Q9UML4	NM_001278074.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371820.3	COL5A1-003	628	210aa	ENSP00000360885.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000464187.1	COL5A1-004	1830	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469093.1	COL5A1-008	670	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463925.1	COL5A1-009	533	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460264.1	COL5A1-002	913	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465877.1	COL5A1-007	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 913 bps,

Version

ENST00000460264.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000054955 (version 2)

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Transcript: ENST00000460264.1 COL5A1-002

Summary