Transcript: ENST00000598424.1 SLC27A1-002

Description

solute carrier family 27 (fatty acid transporter), member 1 [Source:HGNC Symbol;Acc:10995]

Gene Synonyms

ACSVL5, FATP, FATP1, FLJ00336, MGC71751

Location

Chromosome 19: 17,581,298-17,615,795 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 9 domains and features, is associated with 17685 variant alleles and maps to 392 oligo probes.

Gene

This transcript is a product of gene ENSG00000130304.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000252595.7	SLC27A1-001	3594	646aa	ENSP00000252595.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32953	Q6PCB7	NM_198580.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000598424.1	SLC27A1-002	2681	467aa	ENSP00000472313.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z662	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442725.1	SLC27A1-201	2184	646aa	ENSP00000413424.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32953	Q6PCB7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000599965.1	SLC27A1-010	788	166aa	ENSP00000470457.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000599380.1	SLC27A1-004	2596	96aa	ENSP00000469459.1	Nonsense mediated decay		M0QXY2	-	-
ENST00000600277.1	SLC27A1-003	1423	224aa	ENSP00000472082.1	Nonsense mediated decay		B7Z225	-	-
ENST00000600297.1	SLC27A1-005	1163	224aa	ENSP00000469881.1	Nonsense mediated decay		B7Z225	-	-
ENST00000598848.1	SLC27A1-009	497	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000594962.1	SLC27A1-007	4343	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000593701.1	SLC27A1-008	688	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 10, Transcript length: 2,681 bps, Translation length: 467 residues

Version

ENST00000598424.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000464146 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000598424.1 SLC27A1-002

Summary