Transcript: ENST00000252595.7 SLC27A1-001

Description

solute carrier family 27 (fatty acid transporter), member 1 [Source:HGNC Symbol;Acc:10995]

Gene Synonyms

ACSVL5, FATP, FATP1, FLJ00336, MGC71751

Location

Chromosome 19: 17,581,253-17,616,977 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 12 domains and features, is associated with 18311 variant alleles and maps to 497 oligo probes.

Gene

This transcript is a product of gene ENSG00000130304.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000252595.7	SLC27A1-001	3594	646aa	ENSP00000252595.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32953	Q6PCB7	NM_198580.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000598424.1	SLC27A1-002	2681	467aa	ENSP00000472313.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z662	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442725.1	SLC27A1-201	2184	646aa	ENSP00000413424.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32953	Q6PCB7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000599965.1	SLC27A1-010	788	166aa	ENSP00000470457.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000599380.1	SLC27A1-004	2596	96aa	ENSP00000469459.1	Nonsense mediated decay		M0QXY2	-	-
ENST00000600277.1	SLC27A1-003	1423	224aa	ENSP00000472082.1	Nonsense mediated decay		B7Z225	-	-
ENST00000600297.1	SLC27A1-005	1163	224aa	ENSP00000469881.1	Nonsense mediated decay		B7Z225	-	-
ENST00000598848.1	SLC27A1-009	497	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000594962.1	SLC27A1-007	4343	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000593701.1	SLC27A1-008	688	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 3,594 bps, Translation length: 646 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6PCB7

CCDS

This transcript is a member of the Human CCDS set: CCDS32953

Version

ENST00000252595.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000464145 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000252595.7 SLC27A1-001

Summary