Transcript: ENST00000557624.1 RIPK3-004

Description

receptor-interacting serine-threonine kinase 3 [Source:HGNC Symbol;Acc:10021]

Gene Synonyms

RIP3

Location

Chromosome 14: 24,807,252-24,809,221 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 1252 variant alleles and maps to 388 oligo probes.

Gene

This transcript is a product of gene ENSG00000129465.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216274.5	RIPK3-001	1930	518aa	ENSP00000216274.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9628	Q9Y572	NM_006871.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554569.1	RIPK3-009	587	162aa	ENSP00000451840.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000554756.1	RIPK3-002	1758	231aa	ENSP00000452328.1	Nonsense mediated decay		Q9Y572	-	-
ENST00000554338.1	RIPK3-008	500	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000557624.1	RIPK3-004	1629	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557253.1	RIPK3-006	657	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557662.1	RIPK3-007	569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,629 bps,

Version

ENST00000557624.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000414200 (version 2)

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Transcript: ENST00000557624.1 RIPK3-004

Summary