Transcript: ENST00000407004.3 ILF3-001

Description

interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:6038]

Gene Synonyms

CBTF, DRBF, DRBP76, MMP4, MPHOSPH4, MPP4, NF-AT-90, NF110, NF110b, NF90, NF90a, NF90b, NFAR, NFAR-1, NFAR2, TCP110, TCP80

Location

Chromosome 19: 10,765,004-10,796,441 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 20 domains and features, is associated with 18996 variant alleles and maps to 603 oligo probes.

Gene

This transcript is a product of gene ENSG00000129351.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000449870.1	ILF3-203	6119	898aa	ENSP00000404121.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45965	K7EJ09 K7EKJ9 K7EM82 K7ER69 K7ERM6 Q12906	NM_017620.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000318511.3	ILF3-201	6107	894aa	ENSP00000315205.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12246	K7EJ09 K7EKJ9 K7EM82 K7ER69 K7ERM6 Q12906	NM_012218.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000592763.1	ILF3-004	3866	698aa	ENSP00000465515.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJ09 K7EKJ9 K7EM82 K7ER69 K7ERM6 Q12906	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000407004.3	ILF3-001	3671	706aa	ENSP00000384660.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45967	K7EJ09 K7EKJ9 K7EM82 K7ER69 K7ERM6 Q12906	NM_001137673.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420083.1	ILF3-202	3285	690aa	ENSP00000405436.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45966	K7EJ09 K7EKJ9 K7EM82 K7ER69 K7ERM6 Q12906	NM_153464.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590261.1	ILF3-005	3219	894aa	ENSP00000468156.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12246	K7EJ09 K7EKJ9 K7EM82 K7ER69 K7ERM6 Q12906	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000250241.8	ILF3-003	3035	690aa	ENSP00000250241.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45966	K7EJ09 K7EKJ9 K7EM82 K7ER69 K7ERM6 Q12906	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588657.1	ILF3-006	2697	898aa	ENSP00000468181.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45965	K7EJ09 K7EKJ9 K7EM82 K7ER69 K7ERM6 Q12906	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000589998.1	ILF3-002	2622	702aa	ENSP00000465219.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12247	K7EJ09 K7EKJ9 K7EM82 K7ER69 K7ERM6 Q12906	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590009.1	ILF3-014	953	254aa	ENSP00000465654.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJ09 K7EKJ9 K7EM82 K7ER69 K7ERM6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000589600.1	ILF3-016	839	161aa	ENSP00000468134.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJ09 K7EM82 K7ER69 K7ERM6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000589283.1	ILF3-015	599	99aa	ENSP00000466396.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EM82 K7ERM6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000587941.1	ILF3-017	533	122aa	ENSP00000464974.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJ09	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000590869.1	ILF3-023	531	116aa	ENSP00000466235.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ELV3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000593061.1	ILF3-022	475	113aa	ENSP00000466724.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000593199.1	ILF3-013	413	77aa	ENSP00000468323.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ERM6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000585835.1	ILF3-020	849	180aa	ENSP00000467950.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000587505.1	ILF3-025	791	79aa	ENSP00000466991.1	Nonsense mediated decay		K7ENK6 K7ERM6	-	-
ENST00000589416.1	ILF3-019	773	158aa	ENSP00000465831.1	Nonsense mediated decay		K7EPG3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000587840.1	ILF3-026	655	55aa	ENSP00000467704.1	Nonsense mediated decay		K7EQ75	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000589052.1	ILF3-024	637	79aa	ENSP00000468092.1	Nonsense mediated decay		K7ENK6 K7ERM6	-	-
ENST00000589485.1	ILF3-018	620	73aa	ENSP00000467372.1	Nonsense mediated decay		K7EPG3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000586544.1	ILF3-012	3859	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000587928.1	ILF3-008	4230	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000591649.1	ILF3-011	2579	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589173.1	ILF3-021	570	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 17, Transcript length: 3,671 bps, Translation length: 706 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q12906

CCDS

This transcript is a member of the Human CCDS set: CCDS45967

Version

ENST00000407004.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000452060 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000407004.3 ILF3-001

Summary