Transcript: ENST00000576693.1 FXR2-003

Description

fragile X mental retardation, autosomal homolog 2 [Source:HGNC Symbol;Acc:4024]

Gene Synonyms

FMR1L2, FXR2P

Location

Chromosome 17: 7,506,051-7,507,384 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 633 variant alleles and maps to 64 oligo probes.

Gene

This transcript is a product of gene ENSG00000129245.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000250113.7	FXR2-001	2957	673aa	ENSP00000250113.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45604	P51116	NM_004860.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000571597.1	FXR2-002	565	118aa	ENSP00000459230.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L1Z2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000573057.1	FXR2-006	675	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000574490.1	FXR2-005	743	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573957.1	FXR2-004	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000576693.1	FXR2-003	477	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000571079.1	FXR2-007	462	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 477 bps,

Version

ENST00000576693.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000441089 (version 1)

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Transcript: ENST00000576693.1 FXR2-003

Summary