Transcript: ENST00000507208.1 MBD4-009

Description

methyl-CpG binding domain protein 4 [Source:HGNC Symbol;Acc:6919]

Gene Synonyms

MED1

Location

Chromosome 3: 129,151,019-129,158,878 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 12 domains and features, is associated with 3521 variant alleles and maps to 414 oligo probes.

Gene

This transcript is a product of gene ENSG00000129071.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000249910.1	MBD4-001	2470	580aa	ENSP00000249910.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3058	O95243	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429544.2	MBD4-003	2478	574aa	ENSP00000394080.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63768	O95243	NM_003925.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507208.1	MBD4-009	2194	572aa	ENSP00000422327.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63766	E9PEE4	NM_001276271.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000503197.1	MBD4-002	2099	540aa	ENSP00000424873.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63767	O95243	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393278.2	MBD4-201	804	262aa	ENSP00000376959.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63769	O95243	NM_001276273.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509828.1	MBD4-005	576	52aa	ENSP00000422690.1	Nonsense mediated decay		D6RBI7	-	-
ENST00000509587.1	MBD4-004	643	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505883.1	MBD4-006	613	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000511009.1	MBD4-010	530	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000515266.1	MBD4-007	434	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,194 bps, Translation length: 572 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS63766

Version

ENST00000507208.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000355981 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000507208.1 MBD4-009

Summary