Transcript: ENST00000425339.2 PPAT-002

Description

phosphoribosyl pyrophosphate amidotransferase [Source:HGNC Symbol;Acc:9238]

Gene Synonyms

ATASE, GPAT, PRAT

Location

About this transcript

This transcript has 3 exons, is associated with 2858 variant alleles and maps to 350 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264220.2	PPAT-001	3682	517aa	ENSP00000264220.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3505	A8K4H7 Q06203	NM_002703.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510643.1	PPAT-005	808	192aa	ENSP00000423781.1	Nonsense mediated decay		D6RCC8	-	-
ENST00000507724.1	PPAT-004	563	72aa	ENSP00000425119.1	Nonsense mediated decay		D6RE15	-	-
ENST00000507648.1	PPAT-003	928	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000425339.2	PPAT-002	4043	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 4,043 bps,

Version

ENST00000425339.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000362437 (version 1)