Transcript: ENST00000264220.2 PPAT-001

Description

phosphoribosyl pyrophosphate amidotransferase [Source:HGNC Symbol;Acc:9238]

Gene Synonyms

ATASE, GPAT, PRAT

Location

Chromosome 4: 57,259,528-57,301,781 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 13 domains and features, is associated with 17075 variant alleles and maps to 580 oligo probes.

Gene

This transcript is a product of gene ENSG00000128059.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264220.2	PPAT-001	3682	517aa	ENSP00000264220.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3505	A8K4H7 Q06203	NM_002703.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510643.1	PPAT-005	808	192aa	ENSP00000423781.1	Nonsense mediated decay		D6RCC8	-	-
ENST00000507724.1	PPAT-004	563	72aa	ENSP00000425119.1	Nonsense mediated decay		D6RE15	-	-
ENST00000507648.1	PPAT-003	928	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000425339.2	PPAT-002	4043	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 3,682 bps, Translation length: 517 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q06203

CCDS

This transcript is a member of the Human CCDS set: CCDS3505

Version

ENST00000264220.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs2660744, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HapMap-CEU.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000250781 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000264220.2 PPAT-001

Summary