Transcript: ENST00000595753.1 SLC35E1-001

Description

solute carrier family 35, member E1 [Source:HGNC Symbol;Acc:20803]

Gene Synonyms

FLJ14251

Location

Chromosome 19: 16,660,642-16,683,193 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 13 domains and features, is associated with 10944 variant alleles and maps to 718 oligo probes.

Gene

This transcript is a product of gene ENSG00000127526.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000595753.1	SLC35E1-001	5099	410aa	ENSP00000470652.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12346	Q96K37	NM_024881.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436553.2	SLC35E1-004	1343	344aa	ENSP00000400435.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C1I0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000431408.1	SLC35E1-201	595	104aa	ENSP00000397670.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96K37	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421082.1	SLC35E1-005	552	116aa	ENSP00000394092.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JK45	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000409648.4	SLC35E1-007	3691	105aa	ENSP00000387152.4	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000593812.1	SLC35E1-009	924	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000600356.1	SLC35E1-010	869	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470077.1	SLC35E1-003	552	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000596387.1	SLC35E1-011	446	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488894.1	SLC35E1-002	1905	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469055.1	SLC35E1-006	511	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 5,099 bps, Translation length: 410 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96K37

CCDS

This transcript is a member of the Human CCDS set: CCDS12346

Version

ENST00000595753.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000326809 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000595753.1 SLC35E1-001

Summary