Transcript: ENST00000577760.1 RPL23-007

Description

ribosomal protein L23 [Source:HGNC Symbol;Acc:10316]

Gene Synonyms

ACA21, L23, rpL17

Location

Chromosome 17: 37,006,937-37,010,017 reverse strand.

About this transcript

This transcript has 1 exon, is associated with 1568 variant alleles and maps to 603 oligo probes.

Gene

This transcript is a product of gene ENSG00000125691.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000479035.2	RPL23-001	2821	140aa	ENSP00000420311.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11330	J3KTJ3 J3QQT9 P62829 Q9BTQ7	NM_000978.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394332.1	RPL23-003	625	140aa	ENSP00000377865.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11330	J3KTJ3 J3QQT9 P62829 Q9BTQ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000577407.1	RPL23-010	615	122aa	ENSP00000462773.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT29 J3QQT9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000245857.5	RPL23-004	588	81aa	ENSP00000463014.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KTJ3 J3QQT9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394333.1	RPL23-002	444	114aa	ENSP00000377866.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B9ZVP7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378096.3	RPL23-006	392	91aa	ENSP00000367336.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JD32	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000470646.1	RPL23-005	333	34aa	ENSP00000463894.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QQT9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000577760.1	RPL23-007	3081	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000584912.1	RPL23-008	2779	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000584056.1	RPL23-009	549	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000584583.1	RPL23-011	429	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 1, Coding exons: 0, Transcript length: 3,081 bps,

Version

ENST00000577760.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000444071 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000577760.1 RPL23-007

Summary