Transcript: ENST00000226317.5 CXCL6-001

Description

chemokine (C-X-C motif) ligand 6 [Source:HGNC Symbol;Acc:10643]

Gene Synonyms

CKA-3, GCP-2, GCP2, SCYB6

Location

About this transcript

This transcript has 4 exons, is annotated with 16 domains and features, is associated with 1357 variant alleles and maps to 349 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000226317.5	CXCL6-001	1718	114aa	ENSP00000226317.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3560	P80162	NM_002993.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000515050.1	CXCL6-002	557	113aa	ENSP00000424819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RF92	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000503446.1	CXCL6-003	541	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,718 bps, Translation length: 114 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P80162

CCDS

This transcript is a member of the Human CCDS set: CCDS3560

Version

ENST00000226317.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252283 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.