Transcript: ENST00000515872.1 ATP8A1-010

Description

ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:HGNC Symbol;Acc:13531]

Gene Synonyms

ATPASEII, ATPIA, ATPP2

Location

Chromosome 4: 42,461,375-42,467,092 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 2608 variant alleles and maps to 67 oligo probes.

Gene

This transcript is a product of gene ENSG00000124406.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381668.5	ATP8A1-001	8270	1164aa	ENSP00000371084.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3466	H0YAJ4 Q9Y2Q0	NM_006095.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000264449.10	ATP8A1-003	8209	1149aa	ENSP00000264449.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47049	H0YAJ4 Q9Y2Q0	NM_001105529.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510289.1	ATP8A1-002	2238	55aa	ENSP00000426636.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q4G1C1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000514372.1	ATP8A1-004	5918	75aa	ENSP00000426495.1	Nonsense mediated decay		H0YAA1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000506602.1	ATP8A1-008	920	142aa	ENSP00000421164.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000515872.1	ATP8A1-010	469	113aa	ENSP00000426935.1	Nonsense mediated decay		H0YAF4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000504024.1	ATP8A1-005	326	29aa	ENSP00000427295.1	Nonsense mediated decay		H0YAJ4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000511858.1	ATP8A1-009	560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000504510.1	ATP8A1-006	537	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506713.1	ATP8A1-007	324	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 469 bps, Translation length: 113 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000515872.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000363538 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000515872.1 ATP8A1-010

Summary