Transcript: ENST00000411486.2 HJURP-001

Description

Holliday junction recognition protein [Source:HGNC Symbol;Acc:25444]

Gene Synonyms

DKFZp762E1312, FAKTS, FLEG1, URLC9, hFLEG1

Location

Chromosome 2: 234,745,349-234,763,212 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 12 domains and features, is associated with 8410 variant alleles and maps to 456 oligo probes.

Gene

This transcript is a product of gene ENSG00000123485.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000411486.2	HJURP-001	3187	748aa	ENSP00000414109.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33406	Q8NCD3	NM_018410.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432087.1	HJURP-201	2885	694aa	ENSP00000407208.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63167	Q8NCD3	NM_001282962.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441687.1	HJURP-202	2792	663aa	ENSP00000401944.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63166	C9JWC4 Q8NCD3	NM_001282963.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000414924.1	HJURP-007	1776	570aa	ENSP00000393253.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JWC4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000454020.1	HJURP-002	806	268aa	ENSP00000414051.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C3V8	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000433484.2	HJURP-005	823	68aa	ENSP00000395207.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000453122.1	HJURP-006	634	122aa	ENSP00000403668.1	Nonsense mediated decay		F8WCV1	-	-
ENST00000434039.1	HJURP-008	385	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000373395.3	HJURP-003	467	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 3,187 bps, Translation length: 748 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NCD3

CCDS

This transcript is a member of the Human CCDS set: CCDS33406

Version

ENST00000411486.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000130996 (version 6)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000411486.2 HJURP-001

Summary