Transcript: ENST00000357355.3 CD97-002

Description

CD97 molecule [Source:HGNC Symbol;Acc:1711]

Gene Synonyms

TM7LN1

Location

Chromosome 19: 14,492,247-14,519,537 forward strand.

About this transcript

This transcript has 19 exons, is annotated with 60 domains and features, is associated with 14689 variant alleles and maps to 636 oligo probes.

Gene

This transcript is a product of gene ENSG00000123146.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000242786.5	CD97-003	3188	835aa	ENSP00000242786.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32929	P48960	NM_078481.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357355.3	CD97-002	3054	786aa	ENSP00000349918.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32930	P48960	NM_001025160.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358600.3	CD97-001	2751	742aa	ENSP00000351413.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32931	P48960	NM_001784.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586517.1	CD97-008	578	156aa	ENSP00000467351.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EPE8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000592261.2	CD97-010	573	164aa	ENSP00000467478.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EPP8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000587606.1	CD97-006	572	154aa	ENSP00000465800.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKV5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000591080.1	CD97-009	554	149aa	ENSP00000466040.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ELE5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000587728.1	CD97-007	587	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000591565.1	CD97-018	938	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587535.1	CD97-012	931	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586849.1	CD97-014	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000591737.1	CD97-011	541	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000593028.1	CD97-013	483	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590567.1	CD97-015	410	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592341.1	CD97-016	393	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587319.1	CD97-017	287	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 3,054 bps, Translation length: 786 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P48960

CCDS

This transcript is a member of the Human CCDS set: CCDS32930

Version

ENST00000357355.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000459819 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000357355.3 CD97-002

Summary