Transcript: ENST00000335658.6 DPPA4-001

Description

developmental pluripotency associated 4 [Source:HGNC Symbol;Acc:19200]

Gene Synonyms

2410091M23Rik, FLJ10713

Location

Chromosome 3: 109,044,988-109,056,419 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 5 domains and features, is associated with 6615 variant alleles and maps to 479 oligo probes.

Gene

This transcript is a product of gene ENSG00000121570.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000335658.6	DPPA4-001	2817	304aa	ENSP00000335306.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33814	C9J7A7 Q7L190	NM_018189.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000477303.1	DPPA4-005	320	35aa	ENSP00000418313.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J7A7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000495679.1	DPPA4-007	805	68aa	ENSP00000420581.1	Nonsense mediated decay		F8WDC6	-	-
ENST00000478791.1	DPPA4-003	1225	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463966.1	DPPA4-002	1087	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475135.1	DPPA4-004	3043	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487299.1	DPPA4-008	731	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489281.1	DPPA4-006	680	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,817 bps, Translation length: 304 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7L190

CCDS

This transcript is a member of the Human CCDS set: CCDS33814

Version

ENST00000335658.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000353897 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000335658.6 DPPA4-001

Summary