Transcript: ENST00000240617.5 PLBD1-001

Description

phospholipase B domain containing 1 [Source:HGNC Symbol;Acc:26215]

Gene Synonyms

FLJ22662

Location

About this transcript

This transcript has 11 exons, is annotated with 4 domains and features, is associated with 26713 variant alleles and maps to 435 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000240617.5	PLBD1-001	2426	553aa	ENSP00000240617.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31751	F5H053 Q6P4A8	NM_024829.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540572.1	PLBD1-003	553	144aa	ENSP00000438367.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H053	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000541618.1	PLBD1-002	857	40aa	ENSP00000441278.1	Nonsense mediated decay		F5GYQ3	-	-
ENST00000541800.2	PLBD1-004	809	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,426 bps, Translation length: 553 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6P4A8

CCDS

This transcript is a member of the Human CCDS set: CCDS31751

Version

ENST00000240617.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000401203 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.