Transcript: ENST00000316963.3 LYPLA1-001

Description

lysophospholipase I [Source:HGNC Symbol;Acc:6737]

Gene Synonyms

APT-1, APT1, LPL-I, LPL1, hAPT1

Location

Chromosome 8: 54,958,938-55,014,577 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 5 domains and features, is associated with 25803 variant alleles and maps to 616 oligo probes.

Gene

This transcript is a product of gene ENSG00000120992.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000316963.3	LYPLA1-001	2574	230aa	ENSP00000320043.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6157	B4DJV9 E5RJ48 O75608 Q6IAQ1	NM_006330.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000343231.6	LYPLA1-015	1308	214aa	ENSP00000344477.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS64899	E5RGR0 O75608	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518546.1	LYPLA1-007	746	197aa	ENSP00000428729.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RGR0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521352.1	LYPLA1-013	580	90aa	ENSP00000428306.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJ48	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521898.1	LYPLA1-011	335	100aa	ENSP00000430791.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RI35	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000522007.1	LYPLA1-012	250	58aa	ENSP00000427967.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFT6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519926.1	LYPLA1-006	857	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519272.1	LYPLA1-014	765	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521856.1	LYPLA1-003	764	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520896.1	LYPLA1-002	578	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520718.1	LYPLA1-010	577	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519891.1	LYPLA1-005	559	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000517297.1	LYPLA1-008	927	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,574 bps, Translation length: 230 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75608

CCDS

This transcript is a member of the Human CCDS set: CCDS6157

Version

ENST00000316963.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000378238 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000316963.3 LYPLA1-001

Summary