Transcript: ENST00000381728.1 RCL1-006

Description

RNA terminal phosphate cyclase-like 1 [Source:HGNC Symbol;Acc:17687]

Gene Synonyms

RNAC, RPC2, RPCL1, RTC2

Location

Chromosome 9: 4,839,518-4,860,292 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 11468 variant alleles and maps to 175 oligo probes.

Gene

This transcript is a product of gene ENSG00000120158.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381750.4	RCL1-001	2134	373aa	ENSP00000371169.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6456	Q5VZU3 Q9Y2P8	NM_005772.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442869.1	RCL1-003	956	182aa	ENSP00000412000.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VZU3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000448872.2	RCL1-201	820	187aa	ENSP00000388096.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS69565	Q5VZU1 Q5VZU2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381732.3	RCL1-004	804	175aa	ENSP00000371151.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VYW8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381730.1	RCL1-002	801	187aa	ENSP00000371149.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS69565	Q5VZU1 Q5VZU2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381728.1	RCL1-006	758	187aa	ENSP00000371147.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS69565	Q5VZU1 Q5VZU2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441844.1	RCL1-007	497	137aa	ENSP00000413381.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VZU2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000445485.1	RCL1-008	1878	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473230.1	RCL1-005	441	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 758 bps, Translation length: 187 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS69565

Version

ENST00000381728.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000051592 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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All species

Recent locations

Transcript: ENST00000381728.1 RCL1-006

Summary