Transcript: ENST00000338858.5 OLFM3-001

Description

olfactomedin 3 [Source:HGNC Symbol;Acc:17990]

Gene Synonyms

NOE3, NOELIN3, OPTIMEDIN

Location

Chromosome 1: 102,269,042-102,312,529 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 14 domains and features, is associated with 19584 variant alleles and maps to 322 oligo probes.

Gene

This transcript is a product of gene ENSG00000118733.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000370103.4	OLFM3-003	3255	458aa	ENSP00000359121.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30781	Q96PB7	NM_058170.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536598.1	OLFM3-202	2801	140aa	ENSP00000443471.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96PB7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338858.5	OLFM3-001	2189	478aa	ENSP00000345192.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6IMJ0 Q96PB7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359814.3	OLFM3-201	779	235aa	ENSP00000352867.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96PB7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000462354.1	OLFM3-004	2955	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465523.1	OLFM3-002	2926	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468901.1	OLFM3-005	817	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,189 bps, Translation length: 478 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96PB7

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000338858.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000030142 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000338858.5 OLFM3-001

Summary