Transcript: ENST00000462163.1 RPN2-005

Description

ribophorin II [Source:HGNC Symbol;Acc:10382]

Gene Synonyms

RIBIIR, RPN-II, RPNII, SWP1

Location

Chromosome 20: 35,807,733-35,835,846 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 4 domains and features, is associated with 12103 variant alleles and maps to 144 oligo probes.

Gene

This transcript is a product of gene ENSG00000118705.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000237530.6	RPN2-001	2511	631aa	ENSP00000237530.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13291	P04844	NM_002951.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373622.5	RPN2-003	2348	615aa	ENSP00000362724.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46599	P04844	NM_001135771.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373632.4	RPN2-002	1073	344aa	ENSP00000362735.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JYR7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000456102.1	RPN2-004	791	166aa	ENSP00000399137.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JYR4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000437329.1	RPN2-006	520	138aa	ENSP00000409580.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JYR3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000456400.1	RPN2-007	453	147aa	ENSP00000399404.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000462163.1	RPN2-005	712	162aa	ENSP00000435563.1	Nonsense mediated decay		F2Z3K5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000470352.1	RPN2-008	511	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 712 bps, Translation length: 162 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000462163.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000079080 (version 3)

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Transcript: ENST00000462163.1 RPN2-005

Summary