Transcript: ENST00000578114.1 B4GALT6-004

Description

UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 [Source:HGNC Symbol;Acc:929]

Gene Synonyms

B4Gal-T6, beta4Gal-T6, beta4GalT-VI

Location

Chromosome 18: 29,202,210-29,238,427 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 15301 variant alleles and maps to 460 oligo probes.

Gene

This transcript is a product of gene ENSG00000118276.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000306851.5	B4GALT6-001	3891	382aa	ENSP00000306459.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11900	J3QQY9 Q6NT00 Q9UBX8	NM_004775.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000237019.7	B4GALT6-003	2128	343aa	ENSP00000237019.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3XA83	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000383131.3	B4GALT6-005	1239	343aa	ENSP00000372613.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QQY9 Q6NT09	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579372.1	B4GALT6-002	339	71aa	ENSP00000463961.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QQY9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000578114.1	B4GALT6-004	4427	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 4,427 bps,

Version

ENST00000578114.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000447516 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000578114.1 B4GALT6-004

Summary