Transcript: ENST00000600576.1 SLC8A2-008

Description

solute carrier family 8 (sodium/calcium exchanger), member 2 [Source:HGNC Symbol;Acc:11069]

Gene Synonyms

KIAA1087, NCX2

Location

Chromosome 19: 47,933,492-47,935,825 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1192 variant alleles and maps to 110 oligo probes.

Gene

This transcript is a product of gene ENSG00000118160.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000236877.6	SLC8A2-001	5234	921aa	ENSP00000236877.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33065	F5GYS4 F5H6L7 M0R1Z4 M0R211 Q9UPR5	NM_015063.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542837.1	SLC8A2-003	2445	677aa	ENSP00000437536.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GYS4 F5H6L7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539381.1	SLC8A2-004	1606	384aa	ENSP00000440588.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GYS4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000594353.1	SLC8A2-006	581	159aa	ENSP00000472233.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R211	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000597014.1	SLC8A2-005	570	145aa	ENSP00000472208.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R1Z4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000601757.1	SLC8A2-007	575	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000600576.1	SLC8A2-008	633	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 633 bps,

Version

ENST00000600576.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000467001 (version 1)

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Transcript: ENST00000600576.1 SLC8A2-008

Summary