Transcript: ENST00000438475.2 MMP8-004

Description

matrix metallopeptidase 8 (neutrophil collagenase) [Source:HGNC Symbol;Acc:7175]

Gene Synonyms

CLG1, HNC, MMP-8, PMNL-CL

Location

About this transcript

This transcript has 9 exons, is annotated with 20 domains and features, is associated with 6174 variant alleles and maps to 410 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000236826.3	MMP8-001	3056	467aa	ENSP00000236826.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8320	P22894	NM_002424.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438475.2	MMP8-004	1394	344aa	ENSP00000401004.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000528662.2	MMP8-002	2423	36aa	ENSP00000431431.2	Nonsense mediated decay		E9PL87	-	-
ENST00000533258.1	MMP8-007	707	56aa	ENSP00000437173.1	Nonsense mediated decay		E9PJB3	-	-
ENST00000532799.1	MMP8-005	598	43aa	ENSP00000431938.1	Nonsense mediated decay		E9PIY7	-	-
ENST00000531168.1	MMP8-006	528	56aa	ENSP00000433812.1	Nonsense mediated decay		E9PJB3	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 1,394 bps, Translation length: 344 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000438475.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000395225 (version 1)