Transcript: ENST00000479918.1 TMED5-005

Description

transmembrane emp24 protein transport domain containing 5 [Source:HGNC Symbol;Acc:24251]

Gene Synonyms

CGI-100, p28

Location

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 10882 variant alleles and maps to 351 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000370282.3	TMED5-001	6104	229aa	ENSP00000359305.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS743	Q9Y3A6	NM_016040.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000479918.1	TMED5-005	1296	193aa	ENSP00000418992.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53342	Q9Y3A6	NM_001167830.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370280.1	TMED5-004	750	162aa	ENSP00000359303.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AKT3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370290.3	TMED5-002	3847	120aa	ENSP00000471060.1	Nonsense mediated decay		M0R072	-	-
ENST00000483033.1	TMED5-003	3959	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,296 bps, Translation length: 193 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y3A6

CCDS

This transcript is a member of the Human CCDS set: CCDS53342

Version

ENST00000479918.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000029238 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.