Transcript: ENST00000488537.1 TXNIP-003

Description

thioredoxin interacting protein [Source:HGNC Symbol;Acc:16952]

Gene Synonyms

EST01027, HHCPA78, THIF, VDUP1

Location

About this transcript

This transcript has 3 exons, is associated with 1349 variant alleles and maps to 506 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000369317.4	TXNIP-001	2927	391aa	ENSP00000358323.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS913	B4DVM7 Q9H3M7	NM_006472.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425134.1	TXNIP-002	1116	304aa	ENSP00000396322.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1ALI9 F6RIS4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000475171.1	TXNIP-005	1683	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488537.1	TXNIP-003	1509	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486597.1	TXNIP-004	509	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,509 bps,

Version

ENST00000488537.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000100458 (version 1)