Transcript: ENST00000477717.1 ST6GALNAC5-003

Description

ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 [Source:HGNC Symbol;Acc:19342]

Gene Synonyms

MGC3184, SIAT7E, ST6GalNAcV

Location

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 84593 variant alleles and maps to 612 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000477717.1	ST6GALNAC5-003	3751	336aa	ENSP00000417583.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS673	B4DHB7 Q9BVH7	NM_030965.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000318803.6	ST6GALNAC5-002	2055	236aa	ENSP00000436263.1	Nonsense mediated decay		F2Z2C8	-	-
ENST00000496845.1	ST6GALNAC5-004	787	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480428.1	ST6GALNAC5-005	573	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488940.1	ST6GALNAC5-001	533	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 3,751 bps, Translation length: 336 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BVH7

CCDS

This transcript is a member of the Human CCDS set: CCDS673

Version

ENST00000477717.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000026692 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.