Transcript: ENST00000471488.1 HDAC1-009

Description

histone deacetylase 1 [Source:HGNC Symbol;Acc:4852]

Gene Synonyms

GON-10, HD1, RPD3, RPD3L1

Location

Chromosome 1: 32,797,137-32,798,680 forward strand.

About this transcript

This transcript has 4 exons, is associated with 1001 variant alleles and maps to 340 oligo probes.

Gene

This transcript is a product of gene ENSG00000116478.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000373548.3	HDAC1-001	2124	482aa	ENSP00000362649.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS360	F5GXM1 Q13547 Q6IT96	NM_004964.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373541.2	HDAC1-201	1787	289aa	ENSP00000362642.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXM1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428704.1	HDAC1-010	664	211aa	ENSP00000407859.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TEE2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000490081.1	HDAC1-004	1047	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463172.1	HDAC1-003	895	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482310.1	HDAC1-007	779	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481281.1	HDAC1-006	721	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472928.1	HDAC1-005	532	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476391.1	HDAC1-002	2409	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471488.1	HDAC1-009	726	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484305.1	HDAC1-008	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 726 bps,

Version

ENST00000471488.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000020046 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000471488.1 HDAC1-009

Summary